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Indicate the possible hydrophobic interaction with #, hydrogen bond with + , and ionic bond with x (at neutral pH) for the sidechains of the residue pairs in the fo...

Question

Indicate the possible hydrophobic interaction with #, hydrogen bond with + , and ionic bond with x (at neutral pH) for the sidechains of the residue pairs in the following table. Give only one of the most likely interactions for each pair if it exists_ For instance, D (Asp) may form ionic bond (x) with H (His) , K(Lysine) or R(Arginine) and form hydrogen bond (+) with N(Asn), Q(Gln) , S(Ser) , T(Thc); W(Trp) or Y(Tyr) , as shown in the table. Also, V (Val) may form hydrophobic interaction with A

Indicate the possible hydrophobic interaction with #, hydrogen bond with + , and ionic bond with x (at neutral pH) for the sidechains of the residue pairs in the following table. Give only one of the most likely interactions for each pair if it exists_ For instance, D (Asp) may form ionic bond (x) with H (His) , K(Lysine) or R(Arginine) and form hydrogen bond (+) with N(Asn), Q(Gln) , S(Ser) , T(Thc); W(Trp) or Y(Tyr) , as shown in the table. Also, V (Val) may form hydrophobic interaction with A (Ala); F(Bhe), and so on. Since each residue may form alternative interactions, the answers may differ. See Figure 3-5 for the structures of the amino acid sidechains. A | D | E | F | H/ | | K | L | N | Q | R | s | T | V | W | Y # # # L # 1 # # #



Answers

Which amino acids in Table 22.3 are most likely to be involved in hydrophobic interactions?

And so far we go to. Yeah, the immune issues uh Steve's, which involved in hydrophobic and directions are oh, to be here, first one is May nine and 2nd 1 is Leo C. and 3rd 1 is I saw, you see, and 4th 1 is behave 59 and then.

This question asked us which of the four classes and amino acids has side changed the greatest hydrogen bond forming potential which has the greatest potential to form ionic bonds and which has the greatest potential to form hydrophobic interactions. So the first one is asking us about Is which of the four classes Amino Acids has side chains with the greatest hydrogen bond forming potential. So hydrogen bond is when we have to hydrogen. Yeah, they're both on different chains. Just give them little chains. However they may be or good example, it would be what water. Mhm. And a hydrogen bond is with these hydrogen make a weak bond across there. So the best kind for the best kind of side chain or hydrogen bond forming potential is going to be polar bonds and uncharged. Yeah. Yeah. So the next part of the question asked which has the greatest potential to form ionic bonds. So these would be more of the standard bonds that we're familiar with. And this would be best with polar charged bonds. And then last but not least, it asked about hydrophobic interaction. So we will be looking for a group that is very hydrophobic. We know that polar molecules, you can see the polarity here will be going towards that oxygen, the polar molecules such as water or hydro filic. So we would want something that is non polar for hydrophobic.

In this question, we're going to be looking into hydrophobic. Petra phobic interaction and the key word here is hydrophobic and this is usually brought about by the hydrophobic. If and when we're looking at the hydrophobic effect, we are looking at the tendency of non polar non polar molecules and molecular segments in an address solutions to avoid conduct with H 20 molecules. So they sort of repair H 20 molecules. We need solutions. So when we are looking at petra phobic interactions, what we're looking here, this is the interaction between ash to or that is water. And Hi trophy, I traveled and when we are looking at Heidrick hopes these are low water soluble. When it Now looking at the information that we've been given, amino acids within non polar non polar ara group are capable of hydro for people in Turkey. And if we look at mhm amino acids that we've been given, we can tell that these amino acids are. We have my line. We also have loosened. We have I saw the sign. We also have Faneuil the other night. And if we are to look at Clemson, please. An end 11. Our groups, these groups are not long enough to interact. So in terms of the hydrophobic, the hydrophobic interactions, we're just looking at those amino acids that have and non polar arab groups that he have uncharged hydrocarbon and they don't have any So far oxygen and nitrogen

So we want to describe how protest sellers might have forms and we need to take into account hydrophobic and hydrophobic interact mints. Okay, so to have a proto cell, you need some kind of isolation. Right? You need a membrane. So membrane formation is the most important bit. And that's going to form spontaneously from lipids, particularly fatty acids very early on rather than foster leopards. So remember that fatty acids have hydrophobic regions, hydro phobic regions and these hydrophobic regions will preferentially not be facing outwards into environments or inwards into the acquis solution within. For proto cell. They would want to be facing each other and that's where we get by layer formation so we get the member information and then next something else isn't. What is important is that this would be semi permeable. So semi permeability. I'm able membrane. Why is this important? But this was regulate what gets in what gets out of the protests. L and if we look at the proteins and the nucleic acids, these are not going to be passing through a membrane proteins, nucleic acids a large and hydro filic And because they are large hydrophobic molecules, they will not be passing through the uh the proto membranes so they will be staying inside the protest self. So this is a way. But we can thought we can spontaneously get a membrane that keeps the genetic material and the proteins generated from them in the same place inside the cell. So that's how a protocol could form in the water


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